DEXSeq differential exon usage test

Experimental design

samplecondition
klim_con_1.bamControl
klim_con_2.bamControl
klim_con_3.bamControl
klim_con_4.bamControl
klim_con_5.bamControl
klim_con_6.bamControl
klim_con_7.bamControl
klim_con_8.bamControl
klim_con_9.bamControl
klim_kd_1.bamKnockdown
klim_kd_2.bamKnockdown
klim_kd_3.bamKnockdown
klim_kd_4.bamKnockdown
klim_kd_5.bamKnockdown
klim_kd_6.bamKnockdown

formulaDispersion = full

formula0 = reduced

formula1 = full

testForDEU result table

geneIDexternal_gene_namedescriptionchrstartendtotal_exonsexon_changes
ENSG00000008226DLEC1DLEC1 cilia and flagella associated protein [Source:HGNC Symbol;Acc:HGNC:2899]3 38039205 38124025 501
ENSG00000023228NDUFS1NADH:ubiquinone oxidoreductase core subunit S1 [Source:HGNC Symbol;Acc:HGNC:7707]2206114817206159509 351
ENSG00000026652AGPAT41-acylglycerol-3-phosphate O-acyltransferase 4 [Source:HGNC Symbol;Acc:HGNC:20885]6161129967161274061 201
ENSG00000055147FAM114A2family with sequence similarity 114 member A2 [Source:HGNC Symbol;Acc:HGNC:1333]5153990148154038936 512
ENSG00000070061ELP1elongator acetyltransferase complex subunit 1 [Source:HGNC Symbol;Acc:HGNC:5959]91088668981089343281041
ENSG00000072110ACTN1actinin alpha 1 [Source:HGNC Symbol;Acc:HGNC:163]14 68874128 68979440 926
ENSG00000072195SPEGstriated muscle enriched protein kinase [Source:HGNC Symbol;Acc:HGNC:16901]2219434843219493629 941
ENSG00000072501SMC1Astructural maintenance of chromosomes 1A [Source:HGNC Symbol;Acc:HGNC:11111]X 53374149 53422728 341
ENSG00000075043KCNQ2potassium voltage-gated channel subfamily Q member 2 [Source:HGNC Symbol;Acc:HGNC:6296]20 63400208 634726771192
ENSG00000075413MARK3microtubule affinity regulating kinase 3 [Source:HGNC Symbol;Acc:HGNC:6897]141033853771035038311221
ENSG00000076944STXBP2syntaxin binding protein 2 [Source:HGNC Symbol;Acc:HGNC:11445]19 7636881 7647873 551
ENSG00000086570FAT2FAT atypical cadherin 2 [Source:HGNC Symbol;Acc:HGNC:3596]5151504092151591331 271
ENSG00000087460GNASGNAS complex locus [Source:HGNC Symbol;Acc:HGNC:4392]20 58839718 589111921151
ENSG00000089351GRAMD1AGRAM domain containing 1A [Source:HGNC Symbol;Acc:HGNC:29305]19 34994784 35026471 451
ENSG00000100167SEPTIN3septin 3 [Source:HGNC Symbol;Acc:HGNC:10750]22 41969475 41998221 251
ENSG00000100227POLDIP3DNA polymerase delta interacting protein 3 [Source:HGNC Symbol;Acc:HGNC:23782]22 42583721 42614962 291
ENSG00000100485SOS2SOS Ras/Rho guanine nucleotide exchange factor 2 [Source:HGNC Symbol;Acc:HGNC:11188]14 50117130 50231578 341
ENSG00000101191DIDO1death inducer-obliterator 1 [Source:HGNC Symbol;Acc:HGNC:2680]20 62877738 62937952 282
ENSG00000101439CST3cystatin C [Source:HGNC Symbol;Acc:HGNC:2475]20 23626706 23638473 81
ENSG00000102572STK24serine/threonine kinase 24 [Source:HGNC Symbol;Acc:HGNC:11403]13 98445185 98577940 261
ENSG00000103404USP31ubiquitin specific peptidase 31 [Source:HGNC Symbol;Acc:HGNC:20060]16 23064174 23149452 201
ENSG00000104435STMN2stathmin 2 [Source:HGNC Symbol;Acc:HGNC:10577]8 79611117 79666158 102
ENSG00000105186ANKRD27ankyrin repeat domain 27 [Source:HGNC Symbol;Acc:HGNC:25310]19 32597006 32676597 461
ENSG00000105993DNAJB6DnaJ heat shock protein family (Hsp40) member B6 [Source:HGNC Symbol;Acc:HGNC:14888]7157335381157417439 532
ENSG00000106086PLEKHA8pleckstrin homology domain containing A8 [Source:HGNC Symbol;Acc:HGNC:30037]7 30027544 30130483 352
ENSG00000106772PRUNE2prune homolog 2 with BCH domain [Source:HGNC Symbol;Acc:HGNC:25209]9 76611376 76906114 492
ENSG00000106976DNM1dynamin 1 [Source:HGNC Symbol;Acc:HGNC:2972]9128191655128255248 881
ENSG00000107651SEC23IPSEC23 interacting protein [Source:HGNC Symbol;Acc:HGNC:17018]10119892730119944657 331
ENSG00000108312UBTFupstream binding transcription factor [Source:HGNC Symbol;Acc:HGNC:12511]17 44205033 44221626 451
ENSG00000108433GOSR2golgi SNAP receptor complex member 2 [Source:HGNC Symbol;Acc:HGNC:4431]17 46923075 46975524 701
ENSG00000110002VWA5Avon Willebrand factor A domain containing 5A [Source:HGNC Symbol;Acc:HGNC:6658]11124115404124147721 271
ENSG00000111832RWDD1RWD domain containing 1 [Source:HGNC Symbol;Acc:HGNC:20993]6116571409116597675 201
ENSG00000114405C3orf14chromosome 3 open reading frame 14 [Source:HGNC Symbol;Acc:HGNC:25024]3 62319015 62336213 161
ENSG00000114648KLHL18kelch like family member 18 [Source:HGNC Symbol;Acc:HGNC:29120]3 47282917 47346816 201
ENSG00000115414FN1fibronectin 1 [Source:HGNC Symbol;Acc:HGNC:3778]2215360440215436073 921
ENSG00000115419GLSglutaminase [Source:HGNC Symbol;Acc:HGNC:4331]2190880821190965552 491
ENSG00000117139KDM5Blysine demethylase 5B [Source:HGNC Symbol;Acc:HGNC:18039]12027244952028084871164
ENSG00000117411B4GALT2beta-1,4-galactosyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:925]1 43978943 43991170 231
ENSG00000125772GPCPD1glycerophosphocholine phosphodiesterase 1 [Source:HGNC Symbol;Acc:HGNC:26957]20 5544439 5611006 311
ENSG00000127483HP1BP3heterochromatin protein 1 binding protein 3 [Source:HGNC Symbol;Acc:HGNC:24973]1 20740266 20787323 442
ENSG00000128609NDUFA5NADH:ubiquinone oxidoreductase subunit A5 [Source:HGNC Symbol;Acc:HGNC:7688]7123536997123557904 452
ENSG00000129158SERGEFsecretion regulating guanine nucleotide exchange factor [Source:HGNC Symbol;Acc:HGNC:17499]11 17788048 18013047 511
ENSG00000130638ATXN10ataxin 10 [Source:HGNC Symbol;Acc:HGNC:10549]22 45689466 45845307 321
ENSG00000132639SNAP25synaptosome associated protein 25 [Source:HGNC Symbol;Acc:HGNC:11132]20 10218830 10307418 141
ENSG00000134138MEIS2Meis homeobox 2 [Source:HGNC Symbol;Acc:HGNC:7001]15 36889204 37101299 712
ENSG00000134755DSC2desmocollin 2 [Source:HGNC Symbol;Acc:HGNC:3036]18 31058840 31102522 211
ENSG00000134909ARHGAP32Rho GTPase activating protein 32 [Source:HGNC Symbol;Acc:HGNC:17399]11128965060129279324 407
ENSG00000135480KRT7keratin 7 [Source:HGNC Symbol;Acc:HGNC:6445]12 52232520 52252186 411
ENSG00000136861CDK5RAP2CDK5 regulatory subunit associated protein 2 [Source:HGNC Symbol;Acc:HGNC:18672]9120388869120580170 771
ENSG00000139428MMABmetabolism of cobalamin associated B [Source:HGNC Symbol;Acc:HGNC:19331]12109553715109573580 291
ENSG00000139880CDH24cadherin 24 [Source:HGNC Symbol;Acc:HGNC:14265]14 23047062 23057538 211
ENSG00000140416TPM1tropomyosin 1 [Source:HGNC Symbol;Acc:HGNC:12010]15 63042632 63071915 892
ENSG00000144635DYNC1LI1dynein cytoplasmic 1 light intermediate chain 1 [Source:HGNC Symbol;Acc:HGNC:18745]3 32525974 32570858 281
ENSG00000145907G3BP1G3BP stress granule assembly factor 1 [Source:HGNC Symbol;Acc:HGNC:30292]51517710451518129111151
ENSG00000148396SEC16ASEC16 homolog A, endoplasmic reticulum export factor [Source:HGNC Symbol;Acc:HGNC:29006]9136440096136483759 481
ENSG00000148688RPP30ribonuclease P/MRP subunit p30 [Source:HGNC Symbol;Acc:HGNC:17688]10 90871952 90908553 311
ENSG00000152147GEMIN6gem nuclear organelle associated protein 6 [Source:HGNC Symbol;Acc:HGNC:20044]2 38751534 38785002 101
ENSG00000160213CSTBcystatin B [Source:HGNC Symbol;Acc:HGNC:2482]21 43772511 43776330 141
ENSG00000160613PCSK7proprotein convertase subtilisin/kexin type 7 [Source:HGNC Symbol;Acc:HGNC:8748]11117204337117232525 571
ENSG00000163539CLASP2cytoplasmic linker associated protein 2 [Source:HGNC Symbol;Acc:HGNC:17078]3 33496245 33718356 951
ENSG00000164038SLC9B2solute carrier family 9 member B2 [Source:HGNC Symbol;Acc:HGNC:25143]4103019868103077324 331
ENSG00000166135HIF1ANhypoxia inducible factor 1 subunit alpha inhibitor [Source:HGNC Symbol;Acc:HGNC:17113]10100529072100559998 161
ENSG00000166557TMED3transmembrane p24 trafficking protein 3 [Source:HGNC Symbol;Acc:HGNC:28889]15 79311112 79427432 121
ENSG00000166619BLCAPBLCAP apoptosis inducing factor [Source:HGNC Symbol;Acc:HGNC:1055]20 37492472 37527931 321
ENSG00000168397ATG4Bautophagy related 4B cysteine peptidase [Source:HGNC Symbol;Acc:HGNC:20790]2241637213241673857 633
ENSG00000171798KNDC1kinase non-catalytic C-lobe domain containing 1 [Source:HGNC Symbol;Acc:HGNC:29374]10133160219133226412 721
ENSG00000171853TRAPPC12trafficking protein particle complex 12 [Source:HGNC Symbol;Acc:HGNC:24284]2 3379675 3485094 581
ENSG00000172428COPS9COP9 signalosome subunit 9 [Source:HGNC Symbol;Acc:HGNC:21314]2240126563240136807 121
ENSG00000172890NADSYN1NAD synthetase 1 [Source:HGNC Symbol;Acc:HGNC:29832]11 71453109 71524107 781
ENSG00000173272MZT2Amitotic spindle organizing protein 2A [Source:HGNC Symbol;Acc:HGNC:33187]2131464900131492743 171
ENSG00000175899A2Malpha-2-macroglobulin [Source:HGNC Symbol;Acc:HGNC:7]12 9067664 9116229 651
ENSG00000178950GAKcyclin G associated kinase [Source:HGNC Symbol;Acc:HGNC:4113]4 849276 932373 761
ENSG00000182985CADM1cell adhesion molecule 1 [Source:HGNC Symbol;Acc:HGNC:5951]11115169218115504957 481
ENSG00000184857TMEM186transmembrane protein 186 [Source:HGNC Symbol;Acc:HGNC:24530]16 8780384 8797642 51
ENSG00000186432KPNA4karyopherin subunit alpha 4 [Source:HGNC Symbol;Acc:HGNC:6397]3160495007160565571 351
ENSG00000187609EXD3exonuclease 3'-5' domain containing 3 [Source:HGNC Symbol;Acc:HGNC:26023]9137306896137423211 502
ENSG00000188803SHISA6shisa family member 6 [Source:HGNC Symbol;Acc:HGNC:34491]17 11241213 11564063 102
ENSG00000196268ZNF493zinc finger protein 493 [Source:HGNC Symbol;Acc:HGNC:23708]19 21397119 21427577 171
ENSG00000196693ZNF33Bzinc finger protein 33B [Source:HGNC Symbol;Acc:HGNC:13097]10 42574185 42638570 201
ENSG00000198216CACNA1Ecalcium voltage-gated channel subunit alpha1 E [Source:HGNC Symbol;Acc:HGNC:1392]1181317690181808084 701
ENSG00000198363ASPHaspartate beta-hydroxylase [Source:HGNC Symbol;Acc:HGNC:757]8 61500556 61714640 823
ENSG00000204580DDR1discoidin domain receptor tyrosine kinase 1 [Source:HGNC Symbol;Acc:HGNC:2730]6 30876421 309001561431
ENSG00000205476CCDC85Ccoiled-coil domain containing 85C [Source:HGNC Symbol;Acc:HGNC:35459]14 99500190 99604207 171
ENSG00000205978NYNRINNYN domain and retroviral integrase containing [Source:HGNC Symbol;Acc:HGNC:20165]14 24399003 24419283 111
ENSG00000206579XKR4XK related 4 [Source:HGNC Symbol;Acc:HGNC:29394]8 55102028 55542054 121
ENSG00000224078SNHG14small nucleolar RNA host gene 14 [Source:HGNC Symbol;Acc:HGNC:37462]15 24978724 254203363952
ENSG00000225783MIATmyocardial infarction associated transcript [Source:HGNC Symbol;Acc:HGNC:33425]22 26646411 26676475 631
ENSG00000231205ZNF826Pzinc finger protein 826, pseudogene [Source:HGNC Symbol;Acc:HGNC:33875]19 20340269 20424969 171
ENSG00000231312MAP4K3-DTMAP4K3 divergent transcript [Source:HGNC Symbol;Acc:HGNC:54056]2 39436530 39646390 472
ENSG00000233098CCDC144NL-AS1CCDC144NL antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:51340]17 20868433 21002276 491
ENSG00000237649KIFC1kinesin family member C1 [Source:HGNC Symbol;Acc:HGNC:6389]6 33391823 33409896 182
ENSG00000255129novel transcript11113278250113314482 81
ENSG00000262461SPDYE9speedy/RINGO cell cycle regulator family member E9 [Source:HGNC Symbol;Acc:HGNC:45034]7 73076165 73086038 101
ENSG00000283103novel transcript, antisense to ERVK3-119 58309727 58327248 221
ENSG00000285219HULChepatocellular carcinoma up-regulated long non-coding RNA [Source:HGNC Symbol;Acc:HGNC:34232]6 8435568 92941332151
ENSG00000287045novel transcript, antisense to PLS13142687982142723881 22