DEXSeq differential exon usage test

Experimental design

samplecondition
TDPneg1.bamTDPneg
TDPneg2.bamTDPneg
TDPneg3.bamTDPneg
TDPneg4.bamTDPneg
TDPneg5.bamTDPneg
TDPneg6.bamTDPneg
TDPneg7.bamTDPneg
TDPpos1.bamTDPpos
TDPpos2.bamTDPpos
TDPpos3.bamTDPpos
TDPpos4.bamTDPpos
TDPpos5.bamTDPpos
TDPpos6.bamTDPpos
TDPpos7.bamTDPpos

formulaDispersion = full

formula0 = reduced

formula1 = full

testForDEU result table

geneIDexternal_gene_namedescriptionchrstartendtotal_exonsexon_changes
ENSG00000002549LAP3leucine aminopeptidase 3 [Source:HGNC Symbol;Acc:HGNC:18449]4 17577198 17607972 34 3
ENSG00000003989SLC7A2solute carrier family 7 member 2 [Source:HGNC Symbol;Acc:HGNC:11060]8 17497088 17570573 22 1
ENSG00000007402CACNA2D2calcium voltage-gated channel auxiliary subunit alpha2delta 2 [Source:HGNC Symbol;Acc:HGNC:1400]3 50362613 50504244 52 1
ENSG00000067191CACNB1calcium voltage-gated channel auxiliary subunit beta 1 [Source:HGNC Symbol;Acc:HGNC:1401]17 39173453 39197703 36 1
ENSG00000079841RIMS1regulating synaptic membrane exocytosis 1 [Source:HGNC Symbol;Acc:HGNC:17282]6 71886703 72403143 63 1
ENSG00000089250NOS1nitric oxide synthase 1 [Source:HGNC Symbol;Acc:HGNC:7872]12117208142117452170 46 1
ENSG00000099901RANBP1RAN binding protein 1 [Source:HGNC Symbol;Acc:HGNC:9847]22 20115938 20127355 35 1
ENSG00000100150DEPDC5DEP domain containing 5, GATOR1 subcomplex subunit [Source:HGNC Symbol;Acc:HGNC:18423]22 31753867 31908033131 1
ENSG00000100227POLDIP3DNA polymerase delta interacting protein 3 [Source:HGNC Symbol;Acc:HGNC:23782]22 42583721 42614962 29 1
ENSG00000102763VWA8von Willebrand factor A domain containing 8 [Source:HGNC Symbol;Acc:HGNC:29071]13 41566835 41961120 51 1
ENSG00000104320NBNnibrin [Source:HGNC Symbol;Acc:HGNC:7652]8 89933331 90003228 39 1
ENSG00000104435STMN2stathmin 2 [Source:HGNC Symbol;Acc:HGNC:10577]8 79611117 79666158 10 2
ENSG00000108433GOSR2golgi SNAP receptor complex member 2 [Source:HGNC Symbol;Acc:HGNC:4431]17 46923075 46975524 70 1
ENSG00000109846CRYABcrystallin alpha B [Source:HGNC Symbol;Acc:HGNC:2389]11111908564111923722 52 1
ENSG00000110693SOX6SRY-box transcription factor 6 [Source:HGNC Symbol;Acc:HGNC:16421]11 15966449 16739591 58 1
ENSG00000111731C2CD5C2 calcium dependent domain containing 5 [Source:HGNC Symbol;Acc:HGNC:29062]12 22448583 22544546 60 1
ENSG00000112769LAMA4laminin subunit alpha 4 [Source:HGNC Symbol;Acc:HGNC:6484]6112107931112254939 89 1
ENSG00000113448PDE4Dphosphodiesterase 4D [Source:HGNC Symbol;Acc:HGNC:8783]5 58969038 60522120 82 1
ENSG00000114127XRN15'-3' exoribonuclease 1 [Source:HGNC Symbol;Acc:HGNC:30654]3142306607142448062 72 1
ENSG00000117154IGSF21immunoglobin superfamily member 21 [Source:HGNC Symbol;Acc:HGNC:28246]1 18107798 18378483 15 1
ENSG00000120948TARDBPTAR DNA binding protein [Source:HGNC Symbol;Acc:HGNC:11571]1 11012344 11030528 87 0
ENSG00000124788ATXN1ataxin 1 [Source:HGNC Symbol;Acc:HGNC:10548]6 16299112 16761491 39 2
ENSG00000124813RUNX2RUNX family transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:10472]6 45328157 45664349 30 7
ENSG00000125166GOT2glutamic-oxaloacetic transaminase 2 [Source:HGNC Symbol;Acc:HGNC:4433]16 58707131 58734342 23 1
ENSG00000127483HP1BP3heterochromatin protein 1 binding protein 3 [Source:HGNC Symbol;Acc:HGNC:24973]1 20740266 20787323 44 1
ENSG00000128683GAD1glutamate decarboxylase 1 [Source:HGNC Symbol;Acc:HGNC:4092]2170813213170861151 53 1
ENSG00000129422MTUS1microtubule associated scaffold protein 1 [Source:HGNC Symbol;Acc:HGNC:29789]8 17643795 17800917 71 1
ENSG00000138095LRPPRCleucine rich pentatricopeptide repeat containing [Source:HGNC Symbol;Acc:HGNC:15714]2 43886224 43996226173 1
ENSG00000139428MMABmetabolism of cobalamin associated B [Source:HGNC Symbol;Acc:HGNC:19331]12109553715109573580 29 1
ENSG00000141404GNALG protein subunit alpha L [Source:HGNC Symbol;Acc:HGNC:4388]18 11689264 11885685 31 1
ENSG00000143614GATAD2BGATA zinc finger domain containing 2B [Source:HGNC Symbol;Acc:HGNC:30778]1153789030153923360 39 1
ENSG00000144619CNTN4contactin 4 [Source:HGNC Symbol;Acc:HGNC:2174]3 2098813 3057959 57 3
ENSG00000144642RBMS3RNA binding motif single stranded interacting protein 3 [Source:HGNC Symbol;Acc:HGNC:13427]3 28574791 30010391 50 2
ENSG00000146147MLIPmuscular LMNA interacting protein [Source:HGNC Symbol;Acc:HGNC:21355]6 53929982 54266280 34 1
ENSG00000147140NONOnon-POU domain containing octamer binding [Source:HGNC Symbol;Acc:HGNC:7871]X 71254814 71301522 82 1
ENSG00000149294NCAM1neural cell adhesion molecule 1 [Source:HGNC Symbol;Acc:HGNC:7656]11112961247113278436 82 2
ENSG00000151208DLG5discs large MAGUK scaffold protein 5 [Source:HGNC Symbol;Acc:HGNC:2904]10 77790791 77926755 53 1
ENSG00000151692RNF144Aring finger protein 144A [Source:HGNC Symbol;Acc:HGNC:20457]2 6917412 7068286 21 1
ENSG00000152818UTRNutrophin [Source:HGNC Symbol;Acc:HGNC:12635]6144285701144853034 96 1
ENSG00000154175ABI3BPABI family member 3 binding protein [Source:HGNC Symbol;Acc:HGNC:17265]3100749156100993515108 1
ENSG00000163075CFAP221cilia and flagella associated protein 221 [Source:HGNC Symbol;Acc:HGNC:33720]2119544432119662251 57 1
ENSG00000163806SPDYAspeedy/RINGO cell cycle regulator family member A [Source:HGNC Symbol;Acc:HGNC:30613]2 28782517 28850611 21 1
ENSG00000163964PIGXphosphatidylinositol glycan anchor biosynthesis class X [Source:HGNC Symbol;Acc:HGNC:26046]3196712377196736007 23 1
ENSG00000165105RASEFRAS and EF-hand domain containing [Source:HGNC Symbol;Acc:HGNC:26464]9 82979590 83063177 19 1
ENSG00000167306MYO5Bmyosin VB [Source:HGNC Symbol;Acc:HGNC:7603]18 49822789 50195147 49 8
ENSG00000167930FAM234Afamily with sequence similarity 234 member A [Source:HGNC Symbol;Acc:HGNC:14163]16 234521 272183 59 3
ENSG00000168036CTNNB1catenin beta 1 [Source:HGNC Symbol;Acc:HGNC:2514]3 41194741 41260096128 1
ENSG00000168137SETD5SET domain containing 5 [Source:HGNC Symbol;Acc:HGNC:25566]3 9397615 9479240 96 1
ENSG00000169282KCNAB1potassium voltage-gated channel subfamily A member regulatory beta subunit 1 [Source:HGNC Symbol;Acc:HGNC:6228]3156037701156539138 44 4
ENSG00000170417TMEM182transmembrane protein 182 [Source:HGNC Symbol;Acc:HGNC:26391]2102736905103019900 27 1
ENSG00000171094ALKALK receptor tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:427]2 29192774 29921586 42 1
ENSG00000171798KNDC1kinase non-catalytic C-lobe domain containing 1 [Source:HGNC Symbol;Acc:HGNC:29374]10133160219133226412 72 4
ENSG00000171853TRAPPC12trafficking protein particle complex 12 [Source:HGNC Symbol;Acc:HGNC:24284]2 3379675 3485094 58 1
ENSG00000171992SYNPOsynaptopodin [Source:HGNC Symbol;Acc:HGNC:30672]5150601080150659207 13 2
ENSG00000173221GLRXglutaredoxin [Source:HGNC Symbol;Acc:HGNC:4330]5 95751319 95822726 17 1
ENSG00000178904DPY19L3dpy-19 like C-mannosyltransferase 3 [Source:HGNC Symbol;Acc:HGNC:27120]19 32405543 32485895 45 1
ENSG00000179242CDH4cadherin 4 [Source:HGNC Symbol;Acc:HGNC:1763]20 61252261 61940617 21 1
ENSG00000179335CLK3CDC like kinase 3 [Source:HGNC Symbol;Acc:HGNC:2071]15 74598500 74645414 73 1
ENSG00000184445KNTC1kinetochore associated 1 [Source:HGNC Symbol;Acc:HGNC:17255]12122527246122626396 93 1
ENSG00000185774KCNIP4potassium voltage-gated channel interacting protein 4 [Source:HGNC Symbol;Acc:HGNC:30083]4 20728606 21948772 29 2
ENSG00000186432KPNA4karyopherin subunit alpha 4 [Source:HGNC Symbol;Acc:HGNC:6397]3160495007160565571 35 1
ENSG00000186862PDZD7PDZ domain containing 7 [Source:HGNC Symbol;Acc:HGNC:26257]10101007679101032295 37 1
ENSG00000187609EXD3exonuclease 3'-5' domain containing 3 [Source:HGNC Symbol;Acc:HGNC:26023]9137306896137423211 50 1
ENSG00000187672ERC2ELKS/RAB6-interacting/CAST family member 2 [Source:HGNC Symbol;Acc:HGNC:31922]3 55508311 56468467 43 1
ENSG00000187764SEMA4Dsemaphorin 4D [Source:HGNC Symbol;Acc:HGNC:10732]9 89360787 89498130 61 1
ENSG00000196862RGPD4RANBP2 like and GRIP domain containing 4 [Source:HGNC Symbol;Acc:HGNC:32417]2107826892107892544 23 1
ENSG00000198203SULT1C2sulfotransferase family 1C member 2 [Source:HGNC Symbol;Acc:HGNC:11456]2108288639108309915 26 1
ENSG00000198707CEP290centrosomal protein 290 [Source:HGNC Symbol;Acc:HGNC:29021]12 88049016 88142099 92 2
ENSG00000205212CCDC144NLCCDC144A N-terminal pseudogene [Source:HGNC Symbol;Acc:HGNC:33735]17 20836447 20896140 17 1
ENSG00000205622novel transcript21 38812878 38956467 56 1
ENSG00000206190ATP10AATPase phospholipid transporting 10A (putative) [Source:HGNC Symbol;Acc:HGNC:13542]15 25677271 25865184 69 1
ENSG00000218336TENM3teneurin transmembrane protein 3 [Source:HGNC Symbol;Acc:HGNC:29944]4182143987182803024 38 1
ENSG00000224271novel transcript22 47630827 48023004144 1
ENSG00000225106novel transcript, antisense to CDH420 61738219 61755056 5 2
ENSG00000226259GTF2H2Bgeneral transcription factor IIH subunit 2B (pseudogene) [Source:HGNC Symbol;Acc:HGNC:31393]5 70415352 70448015 24 1
ENSG00000229018PMS2P7PMS1 homolog 2, mismatch repair system component pseudogene 7 [Source:HGNC Symbol;Acc:HGNC:33515]7 73005541 73021103 7 1
ENSG00000235358novel transcript1 41242373 41284861 10 1
ENSG00000236107SCN1A-AS1SCN1A and SCN9A antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:54069]2165957188166390771 8211
ENSG00000237773novel transcript7 16970320 17299368 42 1
ENSG00000244040IL12A-AS1IL12A antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:49094]3159902045160225299 41 2
ENSG00000248323LUCAT1lung cancer associated transcript 1 [Source:HGNC Symbol;Acc:HGNC:48498]5 91054834 91314547102 1
ENSG00000262943ALOX12P2arachidonate 12-lipoxygenase pseudogene 2 [Source:HGNC Symbol;Acc:HGNC:432]17 6853861 6954107 43 1
ENSG00000275120novel transcript, antisense to ZSCAN215 84597809 84633988 6 1
ENSG00000288105novel transcript, antisense to ROBO13 79411714 79470827 13 2